mrsfast mapping min/max

vpc-ccg / pamir

Discovery and Genotyping of Novel Sequence Insertions in Many Sequenced Individuals

BSD 3-Clause "New" or "Revised" License

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mrsfast mapping min/max #9

Closed calkan closed 4 years ago

calkan commented 5 years ago

Most of the time the # of reads is not sufficient for mrsfast to determine min/max values. When the input is BAM/CRAM, just use the first ~100K lines in the input and calculate min/max. Then pass these values to mrsfast @yenyilin @fhach

fhach commented 4 years ago

Fixed. Calculated from original bam/sam/cram during the processing. @f0t1h, please reference this issue during merge of 2.0.0.