provide CRAM support - Githubissues

vpc-ccg / sedef

Identification of segmental duplications in the genome

MIT License

26 stars 8 forks source link

Closed calkan closed 5 years ago

calkan commented 5 years ago

this should be relatively easy. While sorting input BAM/CRAM file, just add "-T reference.fasta" to 'samtools view'

calkan commented 5 years ago

oops, wrong repo