Different type of CNV with same start coordinate

vplagnol / ExomeDepth

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

59 stars 26 forks source link

Different type of CNV with same start coordinate #21

Open huzitu opened 4 years ago

huzitu commented 4 years ago

Hi,

I have used ExomeDepth for detecting CNV on WES, and I found there were several CNVs are different type of CNV but with same start coordinate, like the example below: chr10 46109621 46115329 gain N8037M chr10 46109621 46123270 loss N8037M chr10 46109621 46131358 gain N8037M

I changed the format to bed format. How can I know this area is a gain or loss?

Many thanks, Min