reads ratios for regions not called as CNVs

vplagnol / ExomeDepth

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

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reads ratios for regions not called as CNVs #32

Open rajitz opened 4 years ago

rajitz commented 4 years ago

Hi,

Is it possible to get reads ratios for regions that are not called as CNVs by the function CallCNVs() ? Or can we get them from the getBamCounts() or some other way?

Thanks very much, Rajat