A possible bug: getBamCounts returns 0 for every exon region

vplagnol / ExomeDepth

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

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A possible bug: getBamCounts returns 0 for every exon region #54

Open lidd77 opened 1 year ago

lidd77 commented 1 year ago

Hey, I use bwa-mem2 to get some bams , for one bam, getBamCounts returns 0 , but for other bams , the getBamCounts result is correct. so whats wrong with this function ?