Creating a Baseline for calling CNV's for XX and XY samples

vplagnol / ExomeDepth

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

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Creating a Baseline for calling CNV's for XX and XY samples #59

Open justin-greenblatt opened 8 months ago

justin-greenblatt commented 8 months ago

How Does the package deal with calling CNV's and sex chromosomes. Is this taken in account when creating a baseline (expected coverage)? Is this taken in account when using an XX or XY test sample?

Best Regards :)