How to show WSI result - Githubissues

vqdang / hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

MIT License

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How to show WSI result #258

Open caicai2526 opened 1 year ago

caicai2526 commented 1 year ago

Hi, When I run run_wsi.sh，i got some files, how can i display the results predicted by the model in WSI? thanks

simongraham commented 10 months ago

There are different ways of doing it. You can grab a tile from the WSI and plot the contours like we show in examples/usage.ipynb. Alternatively there are other approaches to view results directly on WSI. For example:

Convert to GeoJSON and view with QuPath (you may have to just plot centroids as it may crash with many points)
Convert to pyramid tiff and view as a layer in TIAToolbox tile server