vrmarcelino / CCMetagen

Microbiome classification pipeline
GNU General Public License v3.0
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Issue installing libz-dev #27

Closed qfaber closed 3 years ago

qfaber commented 3 years ago

When I install libz-dev it installs zlib1g-dev

sudo apt-get install libz-dev Reading package lists... Done Building dependency tree
Reading state information... Done Note, selecting 'zlib1g-dev' instead of 'libz-dev' zlib1g-dev is already the newest version (1:1.2.11.dfsg-0ubuntu2). 0 upgraded, 0 newly installed, 0 to remove and 186 not upgraded.

kma seems to download fine, but I have an issue with the next step

**git clone https://bitbucket.org/genomicepidemiology/kma.git Cloning into 'kma'... Receiving objects: 100% (1325/1325), 2.79 MiB | 9.89 MiB/s, done. Resolving deltas: 100% (925/925), done.

cd kma && make /home/racheljoyce/miniconda3/bin/x86_64-conda_cos6-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -std=c99 -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -c -o align.o align.c /home/racheljoyce/miniconda3/bin/x86_64-conda_cos6-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -std=c99 -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -c -o alnfrags.o alnfrags.c In file included from alnfrags.h:24:0, from alnfrags.c:23: filebuff.h:21:10: fatal error: zlib.h: No such file or directory

include

      ^~~~~~~~

compilation terminated.

: recipe for target 'alnfrags.o' failed make: *** [alnfrags.o] Error 1** Any suggestions for how to fix this? Thanks!
vrmarcelino commented 3 years ago

Hi!

Can you post this issue in the KMA page? https://bitbucket.org/genomicepidemiology/kma/issues?status=new&status=open

Thanks!