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vrmarcelino / CCMetagen

Microbiome classification pipeline
GNU General Public License v3.0
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Database download problem #33

Closed AMPByrne closed 2 years ago

AMPByrne commented 3 years ago

Hi, I've been trying to download the pre-indexed databases from you cloudstor website (https://cloudstor.aarnet.edu.au/plus/s/vfKH9S8c5FVGBjV) but the download keeps either stalling or failing at around 40-60 Gb.

I have tried downloading the hole package and individual files using both via firefox and wget, but get the same problem.

Do you know of any potential solution?

vrmarcelino commented 3 years ago

Hi!

I did not manage to reproduce the problem, but maybe cloudstor was offline for a while. I would recommend using wget and downloading one file a time. If it fails, you can resume the download by passing the -c flag:

Ex: wget -c 'https://cloudstor.aarnet.edu.au/plus/s/vfKH9S8c5FVGBjV/download?path=%2F&files=ncbi_nt_no_env_11jun2019.zip'

Hope it helps!