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vsbuffalo / qrqc

Quick Read Quality Control
bioconductor.org/packages/release/bioc/html/qrqc.html
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error in making hash table (for most frequent sequences) #3

Closed najoshi closed 11 years ago

najoshi commented 11 years ago

Hey Vince,

So I ran qrqc with kmers=TRUE and hash=TRUE and when I look at the html output I get this error right after the heading for "Most Frequent Sequences":

Warning: 'makeHashTable' is deprecated. See help("Deprecated")

Error: trying to get slot "hash" from an object of a basic class ("list")

with no slots

Also, the "General Information" is in a very wide table... can you change that to be in the format in was before?

vsbuffalo commented 11 years ago

I will look into makeHashTable. In the meantime, can you share an image of the wide table? It doesn't appear to be wide to me.

najoshi commented 11 years ago

Here's a screenshot. qrqc_wide_table

vsbuffalo commented 11 years ago

This looks like an issue due to your long file names. I have added a width argument to table CSS. makeHashTable had a name clash across two files; this is fixed too.