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vsbuffalo / scythe

A 3'-end adapter contaminant trimmer
MIT License
92 stars 38 forks source link

Sycthe is removing all strings in FASTQ headers that follow a space #2

Closed vsbuffalo closed 12 years ago

vsbuffalo commented 12 years ago

With a FASTQ header like:

@testtesttesttest5:1101:1286:1984 2:N:0:testtest

Scythe is removing the string after the space, leaving:

@testtesttesttest5:1101:1286:1984

This is due to kseq.h's handling of headers but can be fixed.

vsbuffalo commented 12 years ago

This issue has been fixed.