Dorado

[laraPPr]

• link to support ticket: #2024070360000861
• website: https://github.com/nanoporetech/dorado
• installation docs: https://github.com/nanoporetech/dorado
• toolchain: foss/2023b
• toolchain: foss/2023a
• easyblock to use: CMakeMake
• required dependencies:
  • [x] Flye
  • [x] Medaka
• optional dependencies:
  • [ ] ...
• notes:
• effort: (TBD)
• other install methods
  • conda: yes (link?) / no
  • container image: yes (link?) / no
  • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
  • easyconfig outside EasyBuild: yes / no

[boegel]

see also:

• https://github.com/easybuilders/easybuild-easyconfigs/pull/20444
• https://github.com/easybuilders/easybuild-easyconfigs/pull/20596

Update is likely trivial based on that, but we should try and figure out why https://github.com/easybuilders/easybuild-easyconfigs/pull/20444 got stuck...

[pavelToman]

362, https://github.com/vscentrum/vsc-software-stack/issues/361 and https://github.com/vscentrum/vsc-software-stack/issues/360 need to be compatible because the user wants to use them together

[pavelToman]

There is no PyTorch for foss/2023b with CUDA yet -> added to stopped issues for now

[pavelToman]

After meeting 2/8/24 -> stick to foss/2023a not 2023b

[pavelToman]

https://github.com/easybuilders/easybuild-easyconfigs/pull/20596 could resolve this issue

[boegel]

re-opening since we need a PR for latest version of dorado

[pavelToman]

PR

• https://github.com/easybuilders/easybuild-easyconfigs/pull/21234