vscentrum / vsc-software-stack

Central repository of easyconfigs used in the software installations on VSC clusters.

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Open laraPPr opened 1 week ago

laraPPr commented 1 week ago

link to support ticket: 2024070360000842
website: https://github.com/nanoporetech/medaka
installation docs: https://github.com/nanoporetech/medaka
toolchain: foss/2023b
easyblock to use: PythonBundle
required dependencies:
- [ ]
optional dependencies:
- [ ] Flye
- [ ] Dorado
notes:
- ...
effort: (TBD)
other install methods
- conda: yes (link?) / no
- container image: yes (link?) / no
- pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
- easyconfig outside EasyBuild: yes / no

boegel commented 1 week ago

duplicate of #352, see PR for CPU-only version:

GPU variant requires:

pavelToman commented 1 day ago

360 need to be compatible because the user wants to use them together