MATES

[laraPPr]

• link to support ticket: #2024080560000113
• website: https://github.com/mcgilldinglab/MATES
• installation docs: https://github.com/mcgilldinglab/MATES?tab=readme-ov-file#installation
• toolchain: GCC/12.3.0?
• easyblock to use: PythonPackage?PythonBundle?
• required dependencies:
  • [x] SAMtools/1.17-GCC-12.2.0
  • [x] BEDTools/2.31.0-GCC-12.3.0
  • [x] Python/3.11.3-GCCcore-12.3.0
• optional dependencies:
  • [ ] ...
• notes:
  • The user seemed to indicate that you might need python 3.9 but just try with 3.11 and see what happens the versions of SAMtools and BEDTools exactly match the requirements
  • I think the user want a version with and without GPU
• effort: (TBD)
• other install methods
  • conda: yes (link?) / no
  • container image: yes (link?) / no
  • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
  • easyconfig outside EasyBuild: yes / no

[pavelToman]

PR

• https://github.com/easybuilders/easybuild-easyconfigs/pull/21229

[boegel]

PR merged, ready for cleanup