modkit

[laraPPr]

• link to support ticket: #2024091660000681
• website: https://github.com/nanoporetech/modkit
• installation docs: https://github.com/nanoporetech/modkit?tab=readme-ov-file#installation
• toolchain: foss/2023a
• easyblock to use: Cargo?
• required dependencies:
  • [ ] ...
• optional dependencies:
  • [ ] ...
• notes:
  • ...
• effort: (TBD)
• other install methods
  • conda: yes (link?) / no
  • container image: yes (link?) / no
  • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
  • easyconfig outside EasyBuild: yes / no

[pavelToman]

PR for GCCcore/12.3.0:

• https://github.com/easybuilders/easybuild-easyconfigs/pull/21725

[pavelToman]

PR for GCCcore/13.3.0:

• https://github.com/easybuilders/easybuild-easyconfigs/pull/21727

[laraPPr]

Started installing it centrally and some are failing

On gallade:

• 21725
• 21727 On doduo
• 21727

The error:

ERROR: Build of /tmp/eb-xmcnqiml/files_pr21727/m/modkit/modkit-0.4.1-GCCcore-13.3.0.eb failed (err: 'build failed (first 300 chars): cmd " cargo test --profile=release " exited with exit code 101 and output:
warning: unused variable: `patterns`
    --> src/entropy/methylation_entropy.rs:305:13
    |
305 |         let patterns = all_patterns_dp(&sequences, 4, &alphabet_info);
    |             ^^^^^^^^ help: if this is intentional,')

But it is also a little flaky because it failed on shinx and than it passed