VEP

[laraPPr]

• link to support ticket: #2024102560000545
• website: https://www.ensembl.org/info/docs/tools/vep
• installation docs: https://github.com/Ensembl/ensembl-vep
• toolchain: GCC/12.3.0 or newer
• easyblock to use: VEP
• required dependencies:
  • [ ] Perl
  • [ ] Perl-bundle-CPAN?
  • [ ] Archive-Zip
  • [ ] DBD-mysql
  • [ ] BioPerl
  • [ ] Bio-DB-HTS
  • [ ] # VEP requires Compress::Raw::Zlib >= 2.103?
  • [ ] Compress-Raw-Zlib
• optional dependencies:
  • [ ] ...
• notes:
  • ...
• effort: (TBD)
• other install methods
  • conda: yes (link?) / no
  • container image: yes (link?) / no
  • pre-built binaries (RHEL8 Linux x86_64): yes (link?) / no
  • easyconfig outside EasyBuild: yes / no

[PetrKralCZ]

• https://github.com/easybuilders/easybuild-easyconfigs/pull/21801