search

vsoch / forward

Port Forwarding Utility
https://vsoch.github.io/lessons/sherlock-singularity/
MIT License
52 stars 27 forks source link

Making updates to sbatches #45

Closed cagancayco closed 9 months ago

cagancayco commented 10 months ago

It seems non-interactive ssh to Sherlock requires running source /etc/bashrc in order to use module commands. I added this to all of the sbatch scripts that use module ....

I also added specific instructions to start.sh for connecting to a Jupyter notebook based on some confusion a Sherlock user had locating the URL.

vsoch commented 10 months ago

@akkornel could you confirm this? I've never seen something like it before. Thank you!

cagancayco commented 10 months ago

@akkornel If it helps, the issue came up in FD ticket #75901. Thanks!

cagancayco commented 9 months ago

Working on something completely unrelated, I noticed that I'd deleted the default source global definitions from my .bashrc. This is probably what happened to the user in ticket #75901 too. For some reason it only causes an issue with module when using non-interactive ssh...? Either way, we can close this PR, and now I know where to start the next time someone has questions about this tool!