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vtraag / louvain-igraph

Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.
GNU General Public License v3.0
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failed installation on Mac OS 10.11.6 #24

Closed sunlightwang closed 6 years ago

sunlightwang commented 6 years ago

I have already installed igraph (0.7.1_6) and python_igraph (0.7.1.post6), but still failed to install louvain. See messages below:

$ pip3 install louvain Collecting louvain Using cached louvain-0.6.1.tar.gz Requirement already satisfied: python-igraph>=0.7.1.0 in /Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/python_igraph-0.7.1.post6-py3.6-macosx-10.6-intel.egg (from louvain) Installing collected packages: louvain Running setup.py install for louvain ... error Complete output from command /Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c "import setuptools, tokenize;file='/private/var/folders/dz/lxnvmt213gv6350z7gr0lc000114/T/pip-build-hor2axqc/louvain/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /var/folders/dz/lxnvmt213gv6350z7gr0lc000114/T/pip-gf_hj07y-record/install-record.txt --single-version-externally-managed --compile: running install running build running build_py creating build creating build/lib.macosx-10.6-intel-3.6 creating build/lib.macosx-10.6-intel-3.6/louvain copying src/init.py -> build/lib.macosx-10.6-intel-3.6/louvain copying src/_version.py -> build/lib.macosx-10.6-intel-3.6/louvain copying src/functions.py -> build/lib.macosx-10.6-intel-3.6/louvain copying src/Optimiser.py -> build/lib.macosx-10.6-intel-3.6/louvain copying src/VertexPartition.py -> build/lib.macosx-10.6-intel-3.6/louvain Fixing build/lib.macosx-10.6-intel-3.6/louvain/init.py build/lib.macosx-10.6-intel-3.6/louvain/_version.py build/lib.macosx-10.6-intel-3.6/louvain/functions.py build/lib.macosx-10.6-intel-3.6/louvain/Optimiser.py build/lib.macosx-10.6-intel-3.6/louvain/VertexPartition.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma Fixing build/lib.macosx-10.6-intel-3.6/louvain/init.py build/lib.macosx-10.6-intel-3.6/louvain/_version.py build/lib.macosx-10.6-intel-3.6/louvain/functions.py build/lib.macosx-10.6-intel-3.6/louvain/Optimiser.py build/lib.macosx-10.6-intel-3.6/louvain/VertexPartition.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma UPDATING build/lib.macosx-10.6-intel-3.6/louvain/_version.py set build/lib.macosx-10.6-intel-3.6/louvain/_version.py to '0.6.1' running build_ext Build type: dynamic extension Include path: /usr/local/Cellar/igraph/0.7.1_6/include/igraph Library path: /usr/local/Cellar/igraph/0.7.1_6/lib Linked dynamic libraries: igraph Linked static libraries: Extra compiler options: Extra linker options: building 'louvain._c_louvain' extension creating build/temp.macosx-10.6-intel-3.6 creating build/temp.macosx-10.6-intel-3.6/src /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -Iinclude -I/usr/local/Cellar/igraph/0.7.1_6/include/igraph -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c src/CPMVertexPartition.cpp -o build/temp.macosx-10.6-intel-3.6/src/CPMVertexPartition.o /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -Iinclude -I/usr/local/Cellar/igraph/0.7.1_6/include/igraph -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c src/GraphHelper.cpp -o build/temp.macosx-10.6-intel-3.6/src/GraphHelper.o /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -Iinclude -I/usr/local/Cellar/igraph/0.7.1_6/include/igraph -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c src/LinearResolutionParameterVertexPartition.cpp -o build/temp.macosx-10.6-intel-3.6/src/LinearResolutionParameterVertexPartition.o /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -Iinclude -I/usr/local/Cellar/igraph/0.7.1_6/include/igraph -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c src/ModularityVertexPartition.cpp -o build/temp.macosx-10.6-intel-3.6/src/ModularityVertexPartition.o /usr/bin/clang -fno-strict-aliasing -Wsign-compare -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch i386 -arch x86_64 -g -Iinclude -I/usr/local/Cellar/igraph/0.7.1_6/include/igraph -I/Library/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c src/MutableVertexPartition.cpp -o build/temp.macosx-10.6-intel-3.6/src/MutableVertexPartition.o In file included from src/MutableVertexPartition.cpp:1: In file included from include/MutableVertexPartition.h:4: In file included from /usr/include/c++/4.2.1/string:47: In file included from /usr/include/c++/4.2.1/bits/char_traits.h:46: /usr/include/c++/4.2.1/bits/stl_algobase.h:641:15: error: assigning to 'MutableVertexPartition ' from incompatible type 'const int' first = tmp; ^ ~ /usr/include/c++/4.2.1/bits/stl_algobase.h:665:39: note: in instantiation of function template specialization 'std::fill_n::fill_n<MutableVertexPartition **, int, int>' requested here return std::fill_n<__scalar>::fill_n(first, n, value); ^ /usr/include/c++/4.2.1/bits/stl_uninitialized.h:184:12: note: in instantiation of function template specialization 'std::fill_n<MutableVertexPartition **, int, int>' requested here { std::fill_n(first, n, __x); } ^ /usr/include/c++/4.2.1/bits/stl_uninitialized.h:219:12: note: in instantiation of function template specialization 'std::uninitialized_fill_n_aux<MutableVertexPartition , int, int>' requested here std::__uninitialized_fill_n_aux(first, n, __x, _Is_POD()); ^ /usr/include/c++/4.2.1/bits/stl_uninitialized.h:306:12: note: in instantiation of function template specialization 'std::uninitialized_fill_n<MutableVertexPartition , int, int>' requested here { std::uninitialized_fill_n(first, n, x); } ^ /usr/include/c++/4.2.1/bits/stl_vector.h:790:9: note: in instantiation of function template specialization 'std::__uninitialized_fill_n_a<MutableVertexPartition *, int, int, MutableVertexPartition >' requested here std::uninitialized_fill_n_a(this->_M_impl._M_start, n, value, ^ /usr/include/c++/4.2.1/bits/stl_vector.h:261:4: note: in instantiation of function template specialization 'std::vector<MutableVertexPartition , std::allocator<MutableVertexPartition > >::_M_initialize_dispatch' requested here _M_initialize_dispatch(first, last, _Integral()); ^ src/MutableVertexPartition.cpp:219:35: note: in instantiation of function template specialization 'std::vector<MutableVertexPartition , std::allocator<MutableVertexPartition > >::vector' requested here vector<MutableVertexPartition*> partitions(1, NULL); ^ 1 error generated. error: command '/usr/bin/clang' failed with exit status 1

----------------------------------------

Command "/Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c "import setuptools, tokenize;file='/private/var/folders/dz/lxnvmt213gv6350z7gr0lc000114/T/pip-build-hor2axqc/louvain/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /var/folders/dz/lxnvmt213gv6350z7gr0lc000114/T/pip-gf_hj07y-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/dz/lxnvmt213gv63__50z7gr0lc000114/T/pip-build-hor2axqc/louvain/

vtraag commented 6 years ago

It seems that the compiler is a bit strict in your case. I am not sure why it is happening with your compiler, as other compilations on MacOS go well, see for example https://travis-ci.org/conda-forge/louvain-feedstock/jobs/312772685. I've corrected the code in this commit 68587be64cc8c3fcc17a4921052f0bf064470c76 to address this issue, and you shouldn't get such a compiler error anymore. Could you check whether that solves your issue? You can simply download/clone the repository from 68587be64cc8c3fcc17a4921052f0bf064470c76 and run python setup.py install.

If you do need to get a working version before you are able to check whether 68587be64cc8c3fcc17a4921052f0bf064470c76 resolves your issue, you can get a MacOS version from https://anaconda.org/conda-forge/louvain.

sunlightwang commented 6 years ago

Hi Vincent Traag, Thank you very much for your quick efforts and response. The new commit resolved the compiler error (although I got a few warning messages as well). I still don't know why this was happening to my compiler either. Anyway, thank you again!