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vtsyvina / CliqueSNV

MIT License
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output dir cannot be changed #15

Closed gianfilippo closed 2 years ago

gianfilippo commented 2 years ago

Hi,

I am trying to output analysis results to a directory other than the "snv_output" in the same directory as the jar file, but it is not working.

My command line is java -jar clique-snv.jar -log -threads 20 -t 100 -tf 0.01 -m snv-illumina-vc -in $dataDIR/aln_trimmed_sorted.sam -outDIR $outDIR/

Can you please let me know what is wrong with my command line ?

Thanks

gianfilippo commented 2 years ago

Hi,

I actually found the issue. My mistake, sorry. Had -outDIR instead of -outDir

Thanks