search

vtsyvina / CliqueSNV

MIT License
20 stars 5 forks source link

Error with cliqueSNV #22

Open pamelacamejom opened 2 years ago

pamelacamejom commented 2 years ago

Hi, I am getting this error when I run cliqueSNV with some samples. Could you let me know what this means?

Compute SNV data structurejava.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException: Index -1 out of bounds for length 352320
    at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
    at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:205)
    at edu.gsu.start.Start.pacBioSNV(Start.java:211)
    at edu.gsu.start.Start.main(Start.java:69)
Caused by: java.lang.ArrayIndexOutOfBoundsException: Index -1 out of bounds for length 352320
    at edu.gsu.util.builders.SNVStructureBuilder.fillRowsAndCols(SNVStructureBuilder.java:91)
    at edu.gsu.util.builders.SNVStructureBuilder.buildPacBio(SNVStructureBuilder.java:41)
    at edu.gsu.algorithm.SNVPacBioMethod.getHaplotypes(SNVPacBioMethod.java:102)
    at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
    at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
    at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
    at java.base/java.lang.Thread.run(Thread.java:829)
SNV got 1 haplotypes