vuqv / Entanglement_database

Entanglement information from AlphaFold structures
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Alpha Fold structure in entanglement database #1

Closed vuqv closed 2 months ago

vuqv commented 2 months ago

The previous entanglement contains GN and GC data. Our group using model V4 and Fragment F1 only.

The FX is not the model, it is fragment of sequence in the full sequence. For human proteins longer than 2,700 amino acids, these proteins are not available on web-interface but on the downloaded data, check the whole proteome download. This contains longer proteins predicted as overlapping fragments. For example, Titin has predicted fragment structures named as Q8WZ42-F1 (residues 1–1400), Q8WZ42-F2 (residues 201–1600), etc.

vuqv commented 2 months ago

completed on #2