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vvoelz / biceps

Bayesian inference of conformational populations
https://github.com/vvoelz/biceps
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Compiling issues with tabs #43

Closed robraddi closed 6 years ago

robraddi commented 6 years ago

Here is an error I kept receiving when attempting to apply Cython to our python code: PosteriorSampler.pyx:166:0: Mixed use of tabs and spaces I fixed the issue, but it would be convenient if we didn't have to change tabs into spaces. Its not a big deal. Lets just try to remember to use spaces. Maybe there is a command that can be placed in your ~/.vimrc file that avoids this?

Compiling PosteriorSampler.pyx because it changed. [1/1] Cythonizing PosteriorSampler.pyx

Error compiling Cython file:

...

frequency of storing trajectory samples

    self.traj_every = 100

    # initialze restraint child class
    r_J = R.restraint_J()

^

PosteriorSampler.pyx:166:0: Mixed use of tabs and spaces Traceback (most recent call last): File "setup.py", line 5, in ext_modules = cythonize("PosteriorSampler.pyx") File "/Users/tuc41004/anaconda2/lib/python2.7/site-packages/Cython/Build/Dependencies.py", line 1026, in cythonize cythonize_one(*args) File "/Users/tuc41004/anaconda2/lib/python2.7/site-packages/Cython/Build/Dependencies.py", line 1146, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: PosteriorSampler.pyx

robraddi commented 6 years ago

This should've been an email... I'm closing this.

yunhuige commented 6 years ago

I know how to do it in my vimrc file and I have it in vav5 (our testing machine). I just didn't add it in all of my machines. I will do it when I'm in the lab and this won't be an issue in the future.