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vzachari / IronSmithQSM

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
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MEDI Toolbox requires the Matlab Image Processing Toolbox to be installed. #1

Closed vzachari closed 3 years ago

vzachari commented 3 years ago

There is an omission in the Ironsmith installation instructions for v1.0:

MEDI Toolbox requires the Matlab Image Processing Toolbox to be installed. Without the Image Processing Toolbox installed, Ironsmith v1.0 will exit with "MEDI.sh failed message"

The upcoming Ironsmith v1.1 release addresses this issue by checking whether the Image Processing Toolbox is installed for the Matlab version specified in IronsmithQSM/Matlab_Config.txt and prompts users to install it if it is not found.

Documentation for Ironsmith V1.1 will also be updated to inform users of this requirement.

vzachari commented 3 years ago

Issue resolved in Ironsmith QSM V1.2