search

vzachari / IronSmithQSM

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
Other
18 stars 6 forks source link

QSM_container.simg download - file not working #10

Closed Romarieth closed 7 months ago

Romarieth commented 7 months ago

Dear Prof Zachariou,

There seems to be an issue with the QSM_container.simg file I downloaded via the link you provided: https://drive.google.com/file/d/1NFV2z0yIEPKGblQVrcMe8bza8ZS21AO7/view?usp=sharing

The file is found in the Functions folder, but after re-downloading, I still get the following error-message: ERROR : Unknown image format/type: /home/668866/IronSmith/IronSmithQSM-1.2/Functions/QSM_Container.simg ERROR: QSM_Container.simg test FAILED!

I already tried with Ironsmith v1.2 and v1.3

Currently using:

Thank you for your answer in advance! Best regards

vzachari commented 7 months ago

Greetings,

I'll attempt to replicate your error on my end and get back to you with a solution in the next few days,

Thank you,

vzachari commented 7 months ago

Hello,

I re-downloaded the QSM container locally and things appear to work on my end. Do you have Singularity installed on Ubuntu 16.04.7? For example, if you type singularity --version do you get an output like "singularity-ce version 4.0.0" ?

Thank you

Romarieth commented 7 months ago

Greetings,

Thank you for your help. Actually I didn't have the right singularity version installed and will try now. Sorry to have bothered you with that.

Thank you

vzachari commented 7 months ago

Just checking in to see if you need anything else from me. OK to close this issue?

Romarieth commented 7 months ago

Yes its okay to close, it works now, thank you!

jarrelscy commented 4 weeks ago

@Romarieth I am facing the same issue that you have but I have Singularity-ce 4.2.1 installed. How did you get this running?