QSM_Container.simg test failed

vzachari / IronSmithQSM

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.

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QSM_Container.simg test failed #11

Open jarrelscy opened 4 weeks ago

jarrelscy commented 4 weeks ago

Dear Prof Zachariou,

I've run into a similar issue that was previously raised here: https://github.com/vzachari/IronSmithQSM/issues/10 I downloded the simg file from https://drive.google.com/file/d/1NFV2z0yIEPKGblQVrcMe8bza8ZS21AO7/view?usp=sharing

And have git cloned the main branch of this repository.

ERROR: QSM_Container.simg test FAILED!

I am on Ubuntu 24.04 as well as Singularity CE 4.2.1. Any ideas on how to troubleshoot this?

Thanks!