vzachari / IronSmithQSM

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
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Will there be a docker version? #2

Closed sungoku closed 2 years ago

sungoku commented 2 years ago

Hi, After reading about your nice paper in NI, I finally got here, with hope. As I already installed docker, you know, like fmriprep etc. I am looking for a docker version of this package if possible. Can you please provide a docker container version or a simple instruction on how to build IronSmithQSM as a docker image or just provide a DockerFile? Thank you!

vzachari commented 2 years ago

Apologies for the late response. I'll add this to my to do list. I think I will opt for one version of Ironsmith that can work both with docker and singularity. I'll aim for this functionality to be added late this summer. Thank you for the input.

sungoku commented 2 years ago

Happy to know this, thank you.