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Error while using R Studio Step #4 #4

Open danielle-altshuler opened 6 years ago

danielle-altshuler commented 6 years ago

Hi Cory and Brooks,

Please let me know your thoughts regarding the errors within this code. I really appreciate your help in advance!

`06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317 06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317

system("./_build.sh")

processing file: _main.Rmd |....... | 11% ordinary text without R code

|.............. | 22% label: init (with options) List of 2 $ include: logi FALSE $ echo : logi FALSE

Quitting from lines 14-16 (_main.Rmd) Error in parse(text = x, srcfile = src) : :2:144: unexpected '>' 1: library(magrittr) 2: readLines('https://www.zotero.org/api/users/4665261/collections/GAKEVFFE/items/top?limit=100&format=bibtex&key=6SSHE7PQ08JFRKGSTRT7mvwS&v=1') &> ^ Calls: ... evaluate -> parse_all -> parse_all.character -> parse

Please delete _main.Rmd after you finish debugging the error. Execution halted`

Thank you! Danielle

brooksambrose commented 6 years ago

Hi! Can you edit that to use code fences around the console output? See what happens when you click "insert code" from the formatting menu on the comment box.

danielle-altshuler commented 6 years ago
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
06 Feb 2018 01:44:21 [rsession-] ERROR Unexpected git-log output; LOGGED FROM: rstudio::core::Error rstudio::session::modules::git::{anonymous}::Git::log(const string&, const rstudio::core::FilePath&, int, int, const string&, std::vector<rstudio::session::modules::git::{anonymous}::CommitInfo>*) /home/ubuntu/rstudio/src/cpp/session/modules/SessionGit.cpp:1317
> system("./_build.sh")

processing file: _main.Rmd
  |.......                                                          |  11%
  ordinary text without R code

  |..............                                                   |  22%
label: init (with options) 
List of 2
 $ include: logi FALSE
 $ echo   : logi FALSE

Quitting from lines 14-16 (_main.Rmd) 
Error in parse(text = x, srcfile = src) : <text>:2:144: unexpected '>'
1: library(magrittr)
2: readLines('https://www.zotero.org/api/users/4665261/collections/GAKEVFFE/items/top?limit=100&format=bibtex&key=6SSHE7PQ08JFRKGSTRT7mvwS&v=1') &>
                                                                                                                                                  ^
Calls: <Anonymous> ... evaluate -> parse_all -> parse_all.character -> parse

Please delete _main.Rmd after you finish debugging the error.
Execution halted