search

w3c / hcls-fhir-rdf

Sketching out an RDF representation for FHIR
38 stars 15 forks source link

Import FHIR Ontology on Protege #90

Closed Milena1530 closed 3 years ago

Milena1530 commented 3 years ago

I'm looking to import the FHIR Ontology on Protege. I'm struggling to find out which is the right sequence of files to import .

ericprud commented 3 years ago

Are you trying to load the BLENDINGFHIRandRDF files?

Milena1530 commented 3 years ago

I've replaced the content of the catalog-v001.xml with the content of catalog-remote.xml. Then I've tried to import the wrapper.owl in Protege 5.5 through Direct Import --> Import an ontology contained in a local file, but it gave me this errore:

ERROR 11:36:41 An error occurred whilst extracting the Ontology Id from the imported ontology: {} java.lang.NullPointerException: null at org.protege.editor.owl.model.repository.MasterOntologyIDExtractor.getOntologyId(MasterOntologyIDExtractor.java:27) ~[protege-editor-owl.jar:na] at org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage.checkImport(AnticipateOntologyIdPage.java:109) [protege-editor-owl.jar:na] at org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage.lambda$new$0(AnticipateOntologyIdPage.java:44) [protege-editor-owl.jar:na] at java.lang.Thread.run(Thread.java:745) ~[na:1.8.0_121] INFO 11:36:45 -------------------- Importing ontology and imports closure --------------------

ericprud commented 3 years ago

@hsolbrig, any thoughts?

hsolbrig commented 3 years ago

Been a while since I've taken this out for a test drive -- will give it a look. OK if we transfer this issue to the Blending page?

Milena1530 commented 3 years ago

That sounds good, thank you very much

hsolbrig commented 3 years ago

https://github.com/BD2KOnFHIR/BLENDINGFHIRandRDF/issues/6

ericprud commented 3 years ago

closing, noting that the issue has been forwarded to BD2KOnFHIR/BLENDINGFHIRandRDF#6