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wadedismukes / treeducken

GNU General Public License v3.0
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Bug with species and gene names #11

Open heqixin opened 2 years ago

heqixin commented 2 years ago

Hi @wadedismukes @jjustison , I've been using treeducken for teaching a phylogenetic course, in which the students will generate a bunch of gene trees under a specific species tree. However, I found that the generated gene trees's tip labels do not match the species tree tip labels, so there's virtually no way to compare the topology of a gene tree with the species tree. May you fix this bug for the R package?

Also, it seems that in the sim_ltBD function, sometimes when I set gbr to 0 or hgt_rate above 0.3, R will crash.

wadedismukes commented 2 years ago

Hello, I will look into this ASAP. I thought I had fixed this bug, apologies!