Revised documentation on recently changed NotWorn algorithm. I postponed doing this because I wanted to get the new GGIR release out and not rush updating the documentation in the gh-pages.
Circadian rhythm documentation moved from GGIR.Rmd to a new chapter 13 with disclaimer for the IV IS section that will be updated later this year.
Fixed code quotes that were copied from MS Word and that have no meaning in R code.
BTW: I will rebuild the gh-pages after this is merged with master branch to ease reviewing this PR.
Checklist before merging:
[ ] Existing tests still work (check by running the test suite, e.g. from RStudio).
[ ] Added tests (if you added functionality) or fixed existing test (if you fixed a bug).
[ ] Clean code has been attempted, e.g. intuitive object names and no code redundancy.
[ ] Documentation updated:
[ ] Function documentation
[x] Chapter vignettes for GitHub IO
[ ] Vignettes for CRAN
[ ] Corresponding issue tagged in PR message. If no issue exist, please create an issue and tag it.
[ ] Updated release notes in inst/NEWS.Rd with a user-readable summary. Please, include references to relevant issues or PR discussions.
[ ] Added your name to the contributors lists in the DESCRIPTION file, if you think you made a significant contribution.
[ ] GGIR parameters were added/removed. If yes, please also complete checklist below.
In this PR:
BTW: I will rebuild the gh-pages after this is merged with master branch to ease reviewing this PR.
Checklist before merging:
inst/NEWS.Rdwith a user-readable summary. Please, include references to relevant issues or PR discussions.DESCRIPTIONfile, if you think you made a significant contribution.