wadpac / GGIRread

Functions for reading accelerometer data files
https://CRAN.R-project.org/package=GGIRread
Apache License 2.0
5 stars 3 forks source link

ProgresBar failing for readAxivity #63

Closed muschellij2 closed 5 months ago

muschellij2 commented 5 months ago
library(GGIRread)
#> Warning: package 'GGIRread' was built under R version 4.3.2
file = system.file("testfiles", "ax3_testfile.cwa",
                   package = "GGIRread")
GGIRread::readAxivity(file, start = 0, end = Inf, desiredtz = "UTC", progressBar = TRUE)
#> Error in GGIRread::readAxivity(file, start = 0, end = Inf, desiredtz = "UTC", : object 'nr' not found

Created on 2024-04-08 with reprex v2.1.0

Session info ``` r sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.3.1 (2023-06-16) #> os macOS Sonoma 14.3 #> system x86_64, darwin20 #> ui X11 #> language (EN) #> collate en_US.UTF-8 #> ctype en_US.UTF-8 #> tz America/New_York #> date 2024-04-08 #> pandoc 3.1.11.1 @ /usr/local/bin/ (via rmarkdown) #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date (UTC) lib source #> cli 3.6.2 2023-12-11 [1] CRAN (R 4.3.0) #> digest 0.6.34 2024-01-11 [1] CRAN (R 4.3.0) #> evaluate 0.23 2023-11-01 [1] CRAN (R 4.3.0) #> fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0) #> fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.0) #> GGIRread * 1.0.0 2024-03-28 [1] CRAN (R 4.3.2) #> glue 1.7.0 2024-01-09 [1] CRAN (R 4.3.0) #> htmltools 0.5.7 2023-11-03 [1] CRAN (R 4.3.0) #> knitr 1.45 2023-10-30 [1] CRAN (R 4.3.0) #> lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.3.0) #> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0) #> purrr 1.0.2 2023-08-10 [1] CRAN (R 4.3.0) #> R.cache 0.16.0 2022-07-21 [1] CRAN (R 4.3.0) #> R.methodsS3 1.8.2 2022-06-13 [1] CRAN (R 4.3.0) #> R.oo 1.26.0 2024-01-24 [1] CRAN (R 4.3.2) #> R.utils 2.12.3 2023-11-18 [1] CRAN (R 4.3.0) #> Rcpp 1.0.12 2024-01-09 [1] CRAN (R 4.3.0) #> reprex 2.1.0 2024-01-11 [1] CRAN (R 4.3.0) #> rlang 1.1.3 2024-01-10 [1] CRAN (R 4.3.0) #> rmarkdown 2.25 2023-09-18 [1] CRAN (R 4.3.0) #> rstudioapi 0.15.0 2023-07-07 [1] CRAN (R 4.3.0) #> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0) #> styler 1.10.2 2023-08-29 [1] CRAN (R 4.3.0) #> vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.3.0) #> withr 3.0.0 2024-01-16 [1] CRAN (R 4.3.0) #> xfun 0.41 2023-11-01 [1] CRAN (R 4.3.0) #> yaml 2.3.8 2023-12-11 [1] CRAN (R 4.3.0) #> #> [1] /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library #> #> ────────────────────────────────────────────────────────────────────────────── ```
muschellij2 commented 5 months ago

Issue stems from https://github.com/wadpac/GGIRread/blob/af8a3763fd854f1a32e8e8d7e2a3e608b542ffa2/R/readAxivity.R#L394 using nr when wasn't defined yet, and is defined at https://github.com/wadpac/GGIRread/blob/af8a3763fd854f1a32e8e8d7e2a3e608b542ffa2/R/readAxivity.R#L502