Circular dependency between SnowUtils.h and GenomicRegion.h

walaj / SeqLib

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

http://bioinformatics.oxfordjournals.org/content/early/2016/12/21/bioinformatics.btw741.full.pdf+html

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Circular dependency between SnowUtils.h and GenomicRegion.h #2

Closed SHuang-Broad closed 8 years ago

SHuang-Broad commented 8 years ago

Hi Jeremiah,

Just a quick note that there seem to be a circular reference into each other between the two headers.

SnowUtils doesn't seem to need GenomicRegion.

Steve

walaj commented 8 years ago

Hi Steve, very good eye. I made the change and will include in the next update. If you're interested in working on SnowTools, let me know (jwala@broadinstitute.org) and I can add you as a collaborator. No problem though if you're just exploring / trying it out instead. I've been working more lately on updating things, testing them, and incorporating new features (e.g. rolling SGA assemblies into this package), so hopefully this will improve quickly.