Looking for functionalities to replace BamTools with SeqLib

[PauchardL]

Hi,

I'm looking for replacing BamTools with SeqLib and I'm actually having problems to find some functionalities in SeqLib. I already have checked the documentation and didn't find them. The methods I need are:

• Setters such as : SetIsPaired, SetIsProperPair, SetIsFirstmate, SetIsMateMapped, SetIsPrimaryAlignment, SetIsReverseStrand
• Getter IsPrimaryAlignment
• GetSoftClips for an alignment
• A lot of information from read groups. I know there is a method "BamHeader.AsString()" but is there a parser available?

Thank you, Best regards