using namespace SeqLib;
using namespace std;
int main()
{
RefGenome ref;
ref.LoadIndex("hg19.fasta");
std::string seq = ref.QueryRegion("1", 1000000,1001000);
cout <<seq<<endl;
return 0;
}
when i run : g++ main.cpp -std=c++11 -I/home/lqs/biosoft/SeqLib/ -L/home/lqs/biosoft/SeqLib/lib -lhts -lbwa -lfml -lseqlib
main.cpp:36:5: error: ‘RefGenome’ was not declared in this scope
can you help me?
walaj
commented
1 year ago
hi! my main cpp code is:
include
include "SeqLib/BWAWrapper.h"
include "SeqLib/GenomicRegion.h"
using namespace SeqLib; using namespace std; int main() { RefGenome ref; ref.LoadIndex("hg19.fasta"); std::string seq = ref.QueryRegion("1", 1000000,1001000); cout <<seq<<endl; return 0;
}
when i run : g++ main.cpp -std=c++11 -I/home/lqs/biosoft/SeqLib/ -L/home/lqs/biosoft/SeqLib/lib -lhts -lbwa -lfml -lseqlib main.cpp:36:5: error: ‘RefGenome’ was not declared in this scope can you help me?