walaj / SeqLib

C++ htslib/bwa-mem/fermi interface for interrogating sequence data
http://bioinformatics.oxfordjournals.org/content/early/2016/12/21/bioinformatics.btw741.full.pdf+html
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Use system htslib, a couple minor tweaks #63

Closed julianhess closed 3 years ago

julianhess commented 3 years ago

The htslib submodule was getting stale; I think it's better if we use whatever system htslib is already included.

Also implemented a more efficient way of getting the number of softclipped bases, and provided a function for getting the current region index.