Motif selection bam read error

walaj / VariantBam

Filtering and profiling of next-generational sequencing data using region-specific rules

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Motif selection bam read error #19

Open sammilee898 opened 4 years ago

sammilee898 commented 4 years ago

Hello, I am trying to run the program and am coming across this error. Do you have any advice?

$ variant Sorted20130SAMy43Aligned.bam --motif Telomotifs.txt -b -o TelofromSorted.bam ...making the AhoCorasick trie from Telomotifs.txt ...finished making AhoCorasick trie with 1 motifs removeElem: elem of value -1 is below min bin 0,0,0

Johnsonzcode commented 2 years ago

Same error. How to fix it ?

sbrohee commented 2 years ago

Got the same error since I've switched from bcl2fastq to bcl-convert. Which demultiplexing tool are you using?