-b option truncates output at 10k

walaj / VariantBam

Filtering and profiling of next-generational sequencing data using region-specific rules

Other

74 stars 10 forks source link

-b option truncates output at 10k #20

Closed NicRamb closed 1 year ago

NicRamb commented 2 years ago

Hi! I downloaded variantbam through conda (bioconda channel) and I am experiencing the issue where it works until about 10k on the reference, and then filters out all the reads. I saw that this was solved and the issue was closed. But I tried all versions on bioconda (1.3.0, 1.4.3, 1.4.4a) and keep getting this error. Is there a way to overcome this through conda?

Thanks, Nicola

walaj commented 1 year ago

Closing as I don't manage bioconda repos of this, so would recommend just installing directly from updated repos.