walaj / svaba

Structural variation and indel detection by local assembly
GNU General Public License v3.0
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Fastest mode to run svaba #137

Open CHOWDHURY098 opened 5 months ago

CHOWDHURY098 commented 5 months ago

First thank you for such a great tool. i use "Version: 1.2.0"

Let's say i run svaba with large no of patient data (e.g., 167) .But its runining slow mode., what is the fastest way to run svaba?

Currently i use p -16. Have any methods for parallesim or parallel runs ? please let me know about this . Here i attached code "$SVABA_PATH run -t "$tumor_bam" -n "$normal_bam" -G "$REFERENCE_GENOME" -a "$sample_name" -p "$THREADS"

Thank you so much in advance.