Open thelingxichen opened 6 years ago
And for the read t000_161_E00514:191:H3YHNCCXY:4:1117:4350:58778--1:1039183, how come the CIGAR is 150M support the variant? Should 150M means totally match to the reference from chr1:1039183?
Hi, A few comments that might help address your questions:
I hope this helps!
On Wed, Aug 8, 2018 at 5:17 AM, Paprika Chan notifications@github.com wrote:
And for the read t000_161_E00514:191:H3YHNCCXY:4:1117:4350:58778--1:1039183, how come the CIGAR is 150M support the variant? Should 150M means totally match to the reference from chr1:1039183?
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Hi,
This is the alignment information for a somatic SV event.
I want to know how "Tcount: 7 Ncount: 0" is counted?
Meanwhile, the vcf record for this variation is:
How SR=6, DR=7, and AD=8 is calculated based on the alignment information? I didn't seen 7 discordant reads in alignment file.
Thanks a lot