Closed sdgamboa closed 1 year ago
Thanks @sdgamboa.
This will be fixed in the next release of BugSigDB and is already fixed in the devel version of BugSigDB. Note that all body site terms are exported in capitalized form according to #111.
dat <- bugsigdbr::importBugSigDB(version = "devel", cache = FALSE)
terms <- c("HIV", "posterior fornix of vagina")
> terms %in% dat$Condition
[1] FALSE FALSE
While using
bugsigdbr
, I noticed that most terms in 'Body site' should be in lowercase. However, some terms start in uppercase. In some cases, this leads to duplications. I don't think HIV is a body site. See the code below for details.Created on 2023-02-01 with reprex v2.0.2