waldronlab / BugSigDB

A microbial signatures database
https://bugsigdb.org
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"State" always Incomplete in Signatures export #177

Closed lwaldron closed 1 year ago

lwaldron commented 1 year ago

When I download signatures.csv, the "State" of every signature is "Incomplete". This is halting the https://github.com/waldronlab/BugSigDBExports/ GitHub Action.

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lwaldron commented 1 year ago

Also, the first column "Signature page name" of the signatures export is now blank as seen in the above screenshot, which also causes some problems in downstream analysis.

tosfos commented 1 year ago

Both issues should now be resolved.

lwaldron commented 1 year ago

Confirmed! One more related question, when do these export files get generated (like time of day?) so if it is scheduled we can time the BugSigDBExports action appropriately?

tosfos commented 1 year ago

They are generated on the fly, although some of the data may be cached for a bit.