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waldronlab / BugSigDBcuration

For documenting issues related to BugSigDB curation.
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Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns #297

Open SvetlanaUP opened 3 months ago

SvetlanaUP commented 3 months ago

Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns – Casper Sahl Poulsen – Microbiology Spectrum https://journals.asm.org/doi/10.1128/spectrum.01387-21

bolanlew commented 3 months ago

@SvetlanaUP can I be assigned to this article Thank you Bolanle Wahab

FaithAlexander commented 3 months ago

Hello @bolanlew, how is your curation going? Are you open to me collaborating with you? I would really love to. Thanks.

bolanlew commented 3 months ago

Hello @bolanlew, how is your curation going? Are you open to me collaborating with you? I would really love to. Thanks.

Hi @FaithAlexander thank you so much for offering but I already got some help and rounding up the curations already ❤️

SvetlanaUP commented 2 months ago

Hi @bolanlew is https://bugsigdb.org/Study_1048 ready for review? AleruDivine I see you were involved, what's the status of this curation? Thanks?

bolanlew commented 2 months ago

Hi @SvetlanaUP it isn’t ready for review yet, we have added all the experiments, we had some error issues regarding the signatures that caused the delay but it should be ready soon. Thank you

SvetlanaUP commented 2 months ago

ok ok @bolanlew take your time! I just wanted to make sure that all is ok.

SvetlanaUP commented 2 months ago

@bolanlew do you need help in finalizing this curation? Feel free to let me know.

bolanlew commented 2 months ago

@SvetlanaUP yes please, it’s the error issue I keep getting, I have reported it but it still comes up, it’s why i haven’t been able to curate all the signatures

SvetlanaUP commented 2 months ago

@bolanlew it seems that is solved for some studies https://github.com/waldronlab/BugSigDB/issues/224 if it is still a bug in your study, please report it here again.

bolanlew commented 2 months ago

@SvetlanaUP i already reported it. Thank you

SvetlanaUP commented 2 months ago

@bolanlew please report it again. Your report from 4 days ago could be missed.

MyleeeA commented 2 months ago

Hi @bolanlew have you been able to get the error issue solved?

I’ll love to collaborate on this if you are not done with the curation

SvetlanaUP commented 2 months ago

@bolanlew what's the status of this curation? Thanks!

bolanlew commented 2 months ago

Good morning @SvetlanaUP I’m still getting the same error even though I have reported it three times, I was thinking it’s because there’s way too many experiments and signatures cause I curated experiments after this study and i didn’t get any errors

SvetlanaUP commented 2 months ago

@lwaldron could you please help here. Thanks!