waldronlab / BugSigDBcuration

For documenting issues related to BugSigDB curation.
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Breast cancer but not the menopausal status is associated with small changes of the gut microbiota #336

Closed SvetlanaUP closed 5 months ago

SvetlanaUP commented 8 months ago

Breast cancer but not the menopausal status is associated with small changes of the gut microbiota – Natalia Zeber-Lubecka – Frontiers in Oncology https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2024.1279132/full

keamybams commented 8 months ago

@SvetlanaUP I would love to curate this. Thanks.

omojokunoluwatomisin10 commented 7 months ago

@keamybams, Are you still working on your curation or did you forget to ask for review from mentors

keamybams commented 7 months ago

Hello @SvetlanaUP this curation is ready for review https://bugsigdb.org/Study_1065 Thanks.

Scholarpat commented 5 months ago

Hi @SvetlanaUP,

For this experiment, I've made a few changes:

Signature 2 of experiment 1 is not significant (p > 0.05) and should not be included. Additionally, the signatures for experiment 5 are not significant. Therefore, the study should have only two experiments:

Please kindly delete the others.

For the statistical test, a linear model for differential abundance (LINDA) was used. Linear regression has been curated. Is this correct please?

SvetlanaUP commented 5 months ago

Correct @Scholarpat

SvetlanaUP commented 5 months ago

https://bugsigdb.org/Study_1065 reviewed.