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waldronlab / BugSigDBcuration

For documenting issues related to BugSigDB curation.
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Association of the Cervical Microbiota With Pregnancy Outcome in a Subfertile Population Undergoing In Vitro Fertilization: A Case-Control Study #346

Closed Rahila-me closed 3 months ago

Rahila-me commented 5 months ago

Association of the Cervical Microbiota With Pregnancy Outcome in a Subfertile Population Undergoing In Vitro Fertilization: A Case-Control Study - Hao X, - frontiers https://www.frontiersin.org/articles/10.3389/fcimb.2021.654202/full

Rahila-me commented 5 months ago

@SvetlanaUP @Omabekee Please assign this paper to me. Mark as needs review Link: https://bugsigdb.org/Study_937

SvetlanaUP commented 5 months ago

@Rahila-me please see my message here https://github.com/waldronlab/BugSigDBcuration/issues/338

You could check if reviewed issues are corrected in bugsigdb, if not claim it for correction and/or collaborate with the main curator.

SvetlanaUP commented 5 months ago

Noted as a self-assigned curation.

Rahila-me commented 5 months ago

@SvetlanaUP Good morning, I have gone through the whole github issues, looking for the one not marked needs review, last week found none, others (few) not marked people and the own is already collaborating . So last Thursday weekly meeting I raised the issue up that my work has been reviewed and i did well currently i don't have anything i am working, @cmirzayi says we can create issues then curate them. That's why. So should i stop. Waiting for your kind reply thank you.

Rahila-me commented 5 months ago

@SvetlanaUP At this (@Rahila-me please see my message here https://github.com/waldronlab/BugSigDBcuration/issues/338

You could check if reviewed issues are corrected in bugsigdb, if not claim it for correction and/or collaborate with the main curator.) You mean i should checkout reviewed issues, and update the correction based on the comment our mentors left there?, If so i will gladly do that also.

SvetlanaUP commented 5 months ago

@Rahila-me could you please help out here in correcting https://github.com/waldronlab/BugSigDBcuration/issues/155

Rahila-me commented 5 months ago

@SvetlanaUP Ok, On it.

Scholarpat commented 3 months ago

Hello @Rahila-me,

This is a wonderful curation, well done. I've made a few changes:

  1. Condition: Changed from "female infertility" to "pregnancy." Although infertile females were recruited, the study aimed to characterize the cervical microbiota in pregnant females vs. non-pregnant females undergoing IVF.

  2. Statistical Test: Both LEfSe and Wilcoxon tests were initially curated and both were used to detect significantly different abundances as reported in the study. However, the curated signatures were presented as a LEfSe analysis chart. Therefore, I've excluded Wilcoxon from this field.

  3. Signatures: Changed Leuconostocaceae to its heterotypic synonym, Lactobacillaceae, and also added missing taxa.

This curation is now completed @SvetlanaUP.

Thank you!

SvetlanaUP commented 3 months ago

https://bugsigdb.org/Study_937 reviewed.