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waldronlab / BugSigDBcuration

For documenting issues related to BugSigDB curation.
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Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota #372

Closed Analyst-Joan closed 3 weeks ago

Analyst-Joan commented 2 months ago

Link - https://link.springer.com/article/10.1186/s12936-021-03606-4#Sec15

Isioma20 commented 2 months ago

Interesting paper @Analyst-Joan . I'd love to be assigned this for curation @SvetlanaUP @cmirzayi . Thank you!

Isioma20 commented 2 months ago

Thank you!

Isioma20 commented 1 month ago

This study was curated at https://bugsigdb.org/Study_1042 and is now ready for review. thank you!

Scholarpat commented 3 weeks ago

Hi @Isioma20,

This is a wonderful curation. Well done!

The MHT field was curated as 'No,' but the study used the Benjamini-Hochberg false discovery rate (FDR) for MHT. I have corrected this field.

The study has been reviewed and is now complete @SvetlanaUP.

Thank you very much.

SvetlanaUP commented 3 weeks ago

https://bugsigdb.org/Study_1042 reviewed.

Isioma20 commented 3 weeks ago

Hi @Scholarpat . thank you so much for the review. I has written no for MHT correction because while it stated that Benjamini-Hochberg false discovery rate (FDR) was used for alpha diversity and beta diversity indices, it did not mention that it was used when the differential abundance was determined. This also coupled with the fact that the study used Lefse for analysis buttressed my interpretation of the study.

Scholarpat commented 2 weeks ago

Thank you for pointing this out @Isioma20. I'll take a look at it again.

SvetlanaUP commented 2 weeks ago

Corrected "MHT: no". Thanks @Isioma20!

Scholarpat commented 2 weeks ago

Thank you @SvetlanaUP for the correction. Was going to ask this on slack tomorrow. Happy Sunday!