waldronlab / BugSigDBcuration

For documenting issues related to BugSigDB curation.
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Gut microbiome of treatment-naïve MS patients of different ethnicities early in disease course #478

Closed Scholarpat closed 4 weeks ago

Scholarpat commented 3 months ago

Gut microbiome of treatment-naïve MS patients of different ethnicities early in disease – R E Ventura – Scientific Reports

https://www.nature.com/articles/s41598-019-52894-z

MyleeeA commented 1 month ago

Hi @SvetlanaUP Can I be assigned this study to curate?

I'm done with my first contribution

MyleeeA commented 1 month ago

Hi @SvetlanaUP This curation is ready for review

Omabekee commented 4 weeks ago

Excellent curation! @MyleeeA Keep it up! ⭐

Item Description max points
1 All elements marked "Needs review" (none "Incomplete") 1 1
2 Correct study design 1 1
3 Entered all relevant experiments and no irrelevant experiments 1 1
4 Body site correctly identified (i.e. does not include multiple sites) 1 1
5 Condition entered according to contrast (correct EFO ontology) 1 1
6 Contrast groups correctly identified 1 1
7 Groups correctly labeled as 1 and 0 (1=cases, 0=controls) 1 1
8 Antibiotic exclusion correctly identified 1 1
9 Correctly identified sequencing details 2 2
10 Identified correct statistical test 1 1
11 Identified MHT correction 1 1
12 Correctly recorded matched on factors 1 1
13 Entered correct number of statistical tests per experiment 1 1
14 All diversity measures identified 1 1
15 Diversity results correctly entered as increased/decreased/unchanged 1 1
16 All signature sources correctly identified (-1 for each error) 2 2
17 Abundance direction correctly selected 1 1
18 Members of Signatures identified correctly 2 2
19 Correct use of NCBI taxonomy 2 2
TOTAL 23 23

Hi @SvetlanaUP , Review of Study 1111 is complete. Please kindly mark as 'Reviewed'.

SvetlanaUP commented 4 weeks ago

https://bugsigdb.org/Study_1111 reviewed.

MyleeeA commented 4 weeks ago

Thank you so much for this review @Omabekee Thank you too @SvetlanaUP

Happy to keep up the good work and take on more curations 😊