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waldronlab
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GSEABenchmarkeR
Reproducible GSEA Benchmarking
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Error in UseMethod("filter_") When run 'loadEData("tcga", nr.datasets=3)'
#15
SickleLeeks
closed
1 year ago
2
Is there a way to use built-in FDR control for GSEA and other methods?
#14
annikagable
closed
4 years ago
3
evalTypeIError example
#13
annikagable
closed
4 years ago
6
Missing dataset ID in output files when runEA on a single SE
#12
lgeistlinger
closed
4 years ago
2
Naming user-defined functions in console/file output
#11
lgeistlinger
closed
4 years ago
3
vignette: add documentation / example for parallel computation
#10
lgeistlinger
opened
4 years ago
0
Passing on additional arguments to user-defined methods
#9
lgeistlinger
closed
4 years ago
10
loadEData('geo2kegg') loads list of ExpressionSets
#8
annikagable
closed
4 years ago
1
Functional enrichment of differentially methylated regions (DMRs)
#7
moldach
closed
6 years ago
1
Including other enrichment analysis methods
#6
moldach
closed
4 years ago
2
Error from runDE under Windows
#5
moldach
opened
6 years ago
3
upgrade to R dependency to version >=3.5.0 prior to submission to Bioconductor
#4
schifferl
closed
6 years ago
1
consider moving data files to the data directory
#3
schifferl
closed
6 years ago
3
consider the inclusion of unit tests using the `testthat` framework
#2
schifferl
closed
6 years ago
4
make repository public to enable continuous integration servers
#1
schifferl
closed
6 years ago
1