Data availability
The source data are provided with this paper for Figs. 2–5, Supplementary Figs. 1, 2, 4 and 8, which includes the in vitro validation, model parameterization, and clinical validation. For the clinical studies, the UMB-HMP cohort study sequence data and metadata were deposited in the Sequence Read Archive (SRA; http://www.ncbi.nlm.nih.gov/Traces/sra/) under BioProject PRJNA208535 (The daily dynamics of the vaginal microbiota before and after bacterial vaginosis) ([SRP026107] and [SRA091234])33. An abbreviated data set necessary for the reproduction of Fig. 5a, b and Supplementary Fig. 8a, b are in Supplementary Table 4 and the Source data file. The sequence data and metadata for the CONRAD BV study are not in a formal repository, but are fully available upon request; however, we have included an abbreviated version of this data set that includes all the data necessary for reproduction of Fig. 5c, d and Supplementary Fig. 8c, d are in Supplementary Table 5 and can be found in the Source data file. Source data are provided with this paper.
From https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7708644/
Data availability The source data are provided with this paper for Figs. 2–5, Supplementary Figs. 1, 2, 4 and 8, which includes the in vitro validation, model parameterization, and clinical validation. For the clinical studies, the UMB-HMP cohort study sequence data and metadata were deposited in the Sequence Read Archive (SRA; http://www.ncbi.nlm.nih.gov/Traces/sra/) under BioProject PRJNA208535 (The daily dynamics of the vaginal microbiota before and after bacterial vaginosis) ([SRP026107] and [SRA091234])33. An abbreviated data set necessary for the reproduction of Fig. 5a, b and Supplementary Fig. 8a, b are in Supplementary Table 4 and the Source data file. The sequence data and metadata for the CONRAD BV study are not in a formal repository, but are fully available upon request; however, we have included an abbreviated version of this data set that includes all the data necessary for reproduction of Fig. 5c, d and Supplementary Fig. 8c, d are in Supplementary Table 5 and can be found in the Source data file. Source data are provided with this paper.