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waldronlab / MultiAssayExperiment

Bioconductor package for management of multi-assay data
https://waldronlab.io/MultiAssayExperiment/
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assay,RangedRaggedAssay-method slow #181

Closed LiNk-NY closed 7 years ago

LiNk-NY commented 7 years ago

There is room for improvement in this function. Can be simplified with some work.

get the matrix of genes x samples - this currently takes forever

cnvmat = assay(cnv, ranges = gr)
LiNk-NY commented 7 years ago

This issue will be addressed in the newer iteration of this class.

lwaldron commented 7 years ago

I believe this issue is resolved by migration to the RaggedExperiment Bioconductor package.