The function "MultiAssayExperimentToMAF" uses grep to search for syn and nonSyn assays in the mae. However, if there are multiple similarly named assays in the mae, grep can find multiple mae slots on accident. Recommend to require assays to be specified exactly and not use the grep.
First off, thank you for multiAssayExperiment!
The function "MultiAssayExperimentToMAF" uses grep to search for syn and nonSyn assays in the mae. However, if there are multiple similarly named assays in the mae, grep can find multiple mae slots on accident. Recommend to require assays to be specified exactly and not use the grep.
Cheers